Apply filter:
If your filter create raster:
<use filter="url(#MyFilter)" x='0' y='0'/>
If you will use filter effect to fill a shape, you have to define pattern in <defs>:
    <pattern id="motif" patternUnits="userSpaceOnUse" x="0" y="0" width="400" height="400">
    <use filter="url(#MyFilter)"/>
    </pattern> 
and use this pattern to fill:
<circle cx='200' cy='200' r='200' style='stroke:black;fill:url(#motif)'/>